Index

C

Contig (class in indelpost)

count_alleles() (indelpost.VariantAlignment method) count_repeats() (indelpost.Variant method)

D

decompose_complex_variant() (indelpost.Variant method)

F

FailedContig (class in indelpost)

fetch_reads() (indelpost.VariantAlignment method)

G

generate_equivalents() (indelpost.Variant method) get_alignment() (indelpost.Contig method) get_contig() (indelpost.VariantAlignment method)

get_contig_seq() (indelpost.Contig method) get_phasables() (indelpost.Contig method) get_reference_seq() (indelpost.Contig method) get_target_indel() (indelpost.VariantAlignment method)

I

indel_seq (indelpost.Variant attribute) is_del (indelpost.Variant attribute) is_indel (indelpost.Variant attribute)

is_ins (indelpost.Variant attribute) is_leftaligned (indelpost.Variant attribute) is_non_complex_indel() (indelpost.Variant method) is_normalized (indelpost.Variant attribute)

L

left_flank() (indelpost.Variant method)

N

normalize() (indelpost.Variant method)

NullVariant (class in indelpost)

P

phase() (indelpost.VariantAlignment method)

Q

query_vcf() (indelpost.Variant method)

R

right_flank() (indelpost.Variant method)

V

Variant (class in indelpost)

variant_type (indelpost.Variant attribute) VariantAlignment (class in indelpost)